PAG 2012 - Illumina

0 downloads 233 Views 859KB Size Report
Jan 17, 2012 - Below is a list of workshops and posters at the Plant & Animal Genomes XX Conference that present ...
PAG 2012

www.illumina.com/agriculture

Illumina Technology Workshop Discover. Develop. Deploy. In Any Species. On Any Scale. Tuesday, January 17 3:50 p.m. – 6:00 p.m. Golden West Ballroom Refreshments will be provided.

Unraveling Green Genomes Todd Michael, Ph.D. Head, The Genome Analysis Center Monsanto

Applications of Next-Generation Sequencing: From Genes to Genomes Gary Schroth, Ph.D. Distinguished Scientist Illumina, Inc.

Characterization of Transgene Insertion Sites via Amplicon Sequencing Mary Beatty Research Scientist Pioneer Hi-Bred

Applied Genomics for Genetic Improvement: Paving the Way for Biological Discovery Tad S. Sonstegard, Ph.D. Research Geneticist USDA, ARS Beltsville

Visit Illumina at Booth #211 to see a live demo of the MiSeq® personal sequencer. Learn more at www.illumina.com/MiSeq

Illumina Customer Presentations Scientists worldwide are discovering that Illumina provides the industry’s best solutions for cutting-edge genetics research. Below is a list of workshops and posters at the Plant & Animal Genomes XX Conference that present results from studies using Illumina products. Visit these presentations and ask the presenters about their experience using Illumina. Computer Demos Program No.

Title

Primary Organization

C13

The rice annotation project database: Update for a new genome assembly (Os-Nipponbare-Reference-IRGSP-1.0)

National Institute of Agrobiological Sciences

C28

MAPHiTS: an efficient workflow for SNP detection

URGI–INRA de Versailles

WorKshops Program No.

Title

Primary Organization

W008

Improving the maize genome via GBS (genotyping by sequencing)

Cornell University

W014

Extent and characterization of the Arabidopsis defense transcriptome regulated at the transcript isoform level

North Carolina State University, Raleigh

W016

Transcriptome diversity through alternative and antisense polyadenylation

Miami University

W018

Genome-wide methylation analysis of chicken primordial germ cells

North Carolina State University, Raleigh

W021

Feed efficiency in cattle: An epigenetic perspective

University of Missouri, Columbia

W033

From SNP discovery to SNP associations: Using next-generation sequencing and custom arrays to create a high density genetic linkage map for the Silver Lipped Pearl Oyster, Pinctada maxima

Centre for Sustainable Fisheries and Aquaculture, James Cook University

W034

Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia: Unionidae) using a RNA-Seq-based approach

Auburn University

W035

Creation of a genomic resource and quantitative trait loci detection in Pacific Whiteleg Shrimp Litopenaeus vannamei for selective breeding applications

Centre for Sustainable Fisheries and Aquaculture, James Cook University

W038

RNA-Seq analysis of differentially expressed genes in channel catfish after Flavobacterium columnare challenge

Auburn University

W041

Identification Of differentially expressed miRNAs potentially associated with egg quality in Rainbow Trout (Oncorhynchus mykiss)

West Virginia University, Morgantown

W043

Towards the complete genome: Progress of Common Carp Genome Project

Center for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences

W044

An EST/RNAseq library and first-generation linkage map for Sablefish (Anoplopoma fimbria)

University of Victoria

W045

New in-depth Rainbow Trout transcriptome reference and digital atlas of gene expression

West Virginia University, Morgantown

W064

Design of an Illumina Infinium 6K SNPchip for genotyping two large Avocado mapping populations

USDA-ARS SHRS

W068

The sequence of the Banana (Musa acuminata) genome

CIRAD

W073

Sequences of 14,600 gene-bearing minimal tiling path BACs of Morex Barley

University of California, Riverside

W081

An efficient pipeline for sequence based variant detection in commercial Chicken lines

Georg-August-University, Göttingen

W088

Efficient assembly of large genomes from short reads

University of Maryland, College Park

W097

B. napus genome sequence

URGV-INRA

W099

Comparative and population genomics in the Brassicaceae

University of Toronto

W100

Uncovering the ancestral blocks reveals the hexaploid genome of the emerging biofuel crop, Camelina sativa

Agriculture and Agri-Food Canada

W111

Efficient whole genome assembly of mammalian genomes from short reads

University of Maryland, College Park

W112

Status of the Buffalo genome

Università della Tuscia

W113

The Buffalo transcriptome

Parco Tecnologico Padano

W114

SNP discovery across Buffalo breeds

USDA-ARS-ANRI-BFGL

W120

Comparative transcriptome analysis of Eucalyptus genotypes that differ in carbon allocation

EMBRAPA–Brazilian Agricultural Research Corporation, Embrapa Forestry

W123

Identification, analysis and mapping of SNP markers in Theobroma cacao

USDA-ARS

W124

A core set of SNPs for Cacao genotyping

USDA-ARS SHRS

W126

Construction of genomic library of Theobroma cacao using genotyping by sequencing (GBS)

Cocoa Research Institute of Ghana

W136

GWAS data sharing

University of Sydney

W137

Genetic determinism and candidate genes for flowering date—A phenological trait highly affected by climate change in Sweet Cherry

INRA

W144

Performance of Illumina and Affymetrix Bovine high density genotyping platforms in Holsteins and Jerseys

Department of Animal Science, University of California, Davis

W145

Differential gene expression detected via transcriptome sequencing in Angus steers differing for feed efficiency

University of Missouri, Columbia

W151

Genome-wide association study of entropion eyelid in multiple breeds in Sheep

USDA-ARS

W153

Goat genome assembly, availability of an international 50K SNP chip and RH panel: An update of the International Goat Genome Consortium projects

INRA

W158

Sheep Genome Project: Gap filling and unbalanced allelic expression

CSIRO Livestock Industries, on behalf of the International Sheep Genomics Consortium

W157

Whole genome sequencing for variant detection, disease gene identification and an HD SNP chip for Sheep

CSIRO Livestock Industries

W164

Transcriptome of Ponkan mandarin (Citrus reticulata Blanco) in the early infection of Xylella fastidiosa

Centro de Citricultura Sylvio Moreiral

W179

Overview of the genotyping-by-sequencing technology and its applications In diverse organisms

Cornell University

W185

Targeted analysis of polyploid Wheat genome by exon capture

Kansas State University, Manhattan

W188

Lettuce genome update

Genome Center, University of California, Davis

W189

The Sunflower genome and its evolution

University of British Columbia, Vancouver

W190

Genomic resourses in Cynara cardunculus

DIVAPRA - Plant Genetics and Breeding, University of Turin

W202

SNP-based genotyping in Lentil: Linking sequence information with phenotypes

University of Saskatchewan

W217

High-throughput sequencing makes TILLING more fun

University of California, Davis

W259

Cribbing: A compulsive behavior and its genetic component

University of Sydney

W262

Genome-wide across and within breed association studies in Horses

University of Veterinary Medicine Hannover

W281

The repetitive DNA of conifers–lessons from the Norway Spruce (Picea abies) genome and resequencing of 5 other conifers

Science for Life Laboratory/Karolinska Institute

W282

Differential transcriptomes during forming of epigenetic memory In Norway Spruce

Norwegian Forest and Landscape Institute

W288

Exploring the megagenome of Pine by targeted resequencing

University of Florida, Gainesville

W291

The genome of Aspen (Populus tremula)–the most complex genome sequenced to date?

Umeå Plant Science Centre, Dept of Plant Physiology, Umeå University

W296

Comparative genomics of 15 tropical Fagaceae species using shallow Illumina sequencing and a reference-free approach

Chinese Academy of Sciences

W300

Association genetics of traits underlying secondary cell wall chemistry and ultrastructure in Populus trichocarpa

University of British Columbia

W313

RosBREED: Infinium SNP genotyping in Prunus

Clemson University

W314

Genomic tools enhance power and precision of Hazelnut breeding

Oregon State University, Corvallis

W315

A draft assembly and analysis of the highly heterozygous diploid Red Raspberry genome (Rubus idaeus cv. Heritage)

Cornell University, Geneva, NY

W317

Genome-wide SNP detection, validation, and development of an 8K SNP array for Apple

Plant and Food Research

W320

Genome sequencing and resource development for European Hazelnut cultivars

Oregon State University, Corvallis

W323

Finding function in complex crop genomes

University of Queensland

W332

Studying functional genomics with next-generation sequencing

Illumina

W333

Routine digital methylation profiling of population cohorts with bisulfite padlock probes

University of California, San Diego

W355

Applications of genome sequencing for Peanut improvement

University of California, Davis Genome Center

W361

Identification of SNP haplotypes and prospects of association mapping in Watermelon

Gus R. Douglass Institute and Department of Biology, West Virginia State University

W363

Germplasm management in the post-genomics era—A case study with Lettuce

USDA- ARS

W426

Physical map and shotgun sequence of the Aegilops tauschii genome

University of California, Davis

W427

Towards a reference sequence of the Bread Wheat chromosome 3B

INRA GDEC

W439

Genomic diversity and sequence-based association analyses in Medicago truncatula

University of Minnesota, Saint Paul

W442

Transcriptome of common Bean (Phaseolus vulgaris) through RNA-seq: Nodulation, symbiotic nitrogen fixation, transcription factors

Centro de Ciencias GenomicasUniversidad Nacional Autónoma de México, Cuernavaca

W448

High resolution TranSNiPtomics: Gene expression and SNP detection in high throughput and high resolution by “Massive Analysis of cDNA Ends” (MACE)

GenXPro-GmbH

W469

Development of a high-density SNP genotyping panel as a community resource for genetic analysis in Oat

USDA-ARS

W474

Sequencing and genotyping in a complex genome: Current status and future possibilities

Illumina

W475

Identification of fertility restorers for S Male-Sterile Maize: Beyond PPRs

University of Florida, Gainesville

W512

Assembly of huge plant genomes from WGS data

University of Maryland, College Park

W528

Population genomics of vegetative phenology in Populus

West Virginia University, Morgantown

W530

Chilling requirement and bloom date in Peach: Genetic and genomic approaches for deciphering a complex gene network

Clemson University

W539

The Potato Aphid transcriptome and salivary secretome

University of California, Riverside

W588

Search for genomic footprints of divergent selection from whole genome sequencing of four experimental lines of Broiler Chickens

Department of Animal and Food Sciences, University of Delaware, Newark

W627

Genomes to genes: Comparative genomic analysis in Prunoideae

Washington State University, Pullman

W628

The Potato genome sequencing project 2 years on: Comparison of strategies with related projects and perspectives for the future of the world’s 3rd food crop

Wageningen-UR

W629

Just genes–well mostly: Genomic enrichment for Sugarcane genic regions

The University of Queensland

W644

Sequencing and comparison of the genomes of Petunia inflata and Petunia axillaris

Northern Illinois University

W646

Towards completion of the genome that makes Hot Pepper

Seoul National University

W659

Towards early-stage chilling tolerance for European energy sorghum

Justus-Liebig University Giessen, Department of Plant Breeding

W680

Re-sequencing and hybrid assembly strategy of two nematode resistant Beta vulgaris translocation lines

Christian Albrechts University of Kiel

W686

Genomic and epigenetic characterization of Sugarcane hybrids and wild relatives

IBqM/Universidade Federal do Rio de Janeiro

W694

Whole genome re-sequencing of Pigs and Wild Boar reveals unexpected signatures in variation related to biogeography, domestication, and hybridization

Wageningen University, Animal Breeding and Genomics Centre

W695

Identification of QTLs and genes related to immune response to Poly (I:C) stimulation in a Duroc-Erhualian F2 Pig population

Huazhong Agricultural University

W696

Genome-wide association of a novel Porcine stress-syndrome to dystrophin

USDA-ARS, USMARC

W718

Sequencing the obligate Oomycete plant pathogen, Bremia lactucae

University of California, Davis Genome Center

W720

Genome sequence for the Apicomplexan Sarcosystis neurona

University of Georgia, Institute of Bioinformatics, Center for Tropical and Emerging Global Diseases & Department of Genetics

posters Program No.

Title

Primary Organization

P0001

ARK-Genomics Centre for Comparative and Functional Genomics

The Roslin Institute, University of Edinburgh

P0007

Enhancing whole genome, transcriptome and metagenomic sequencing with next-generation sequencing platforms

University of Illinois W. M. Keck Center, Urbana

P0009

Repeat reduction in Illumina libraries prior to sequencing using duplex-specific nuclease

University of California, Davis Genome Center

P0010

Rapid and efficient methods for preparing rRNA-depleted and directional Plant RNA-Seq libraries

Epicentre (an Illumina® company)

P0014

Resequencing in a mapping population

Southern Illinois University Carbondale

P0015

Exploring the genome diversity of Mycorrhizal Fungi–A JGI Sequencing Project update

Pennsylvania State University, University Park

P0020

An evolutionary aspect for two subspecies of Oryza sativa and three wild accessions of Oryza rufipogon

Mitsubishi Space Software Co., Ltd.

P0021

Analysis of the Oryza nivara genome

Institute of Plant Biology, National Taiwan University

P0022

Reference-guided de novo genome assembly of the Indica Type Rice Variety IR 64 using short-read sequencing

International Rice Research Institute

P0026

Gene content, loss, conservation and genetic variation among Triticum aestivum group 7 chromosomes

Australian Centre for Plant Functional Genomics

P0027

Sequence-ready, physical maps of chromosomes 1D, 4D, and 6D of hexaploid Wheat

Kansas State University, Manhattan

P0029

Whole genome shotgun sequencing and assembly to access the gene rich portion of the genome of Lolium perenne L

Teagasc

P0030

De novo genome sequencing of perennial Ryegrass (Lolium perenne)

Department of Molecular Biology and Genetics, Aarhus University

P0032

A gene expression atlas of developing Oat seeds for enhancing nutritional composition

USDA-ARS

P0033

A whole genome reference sequence of Amborella

University of Florida, Gainesville

P0040

De novo assembly of the Carrot mitochondrial genome

University of Wisconsin, Madison

P0042

Unraveling Chickpea transcriptome for gene discovery and marker development using next generation sequencing technologies

National Institute of Plant Genome Research

P0043

Using genomic approaches to study an economic important Weedy Plant Conyza canadensis

University of Tennessee, Knoxville

P0044

Gossypium arboreum genome assembly using a sequence-based physical map

National Center for Genome Resources

P0049

Identification and characterization of microRNAs from Eugenia uniflora

Laboratory of Genomes and Plant Population, Center of Biotechnology, Federal University of Rio Grande do Sul

P0050

Genome size evolution in the genus Genlisea—From half of the A. thaliana genome to the twenty-fold

Max Planck Institute for Plant Breeding Research (MPIPZ)

P0051

Identification of rhizome-specific transcripts, putative TFs and SNPs in Ginger using next-generation sequencing technology

Institute of Biological Chemistry, Washington State University, Pullman

P0054

Alfalfa genome sequencing efforts: Strategies and progress

Noble Foundation

P0055

Next generation sequencing of Medicago truncatula plastid genomes

Rutgers University, Waksman Institute of Microbiology

P0061

RNA-seq reveals extensive diversity among Potato genomes and functional complexity of organ and transgene specific defense mechanisms against the Late Blight Pathogen (Phytopthora infestans)

Department of Plant Pathology, University of Minnesota

P0062

Transcriptome characterization for genome annotation and functional genomics In Pyrus spp

Nanjing Agricultural University

P0064

Comparative genomic analysis in Prunoideae

Washington State University, Pullman

P0067

Sequencing and analysis of the Rotylenchulus reniformis transcriptome

Institute for Genomics, Biocomputing, and Biotechnology, Mississippi State University

P0070

Resequencing of recombination inbred line populations reveals the landscape of SNP distribution and recombination patterns in Soybean

University of Missouri, Columbia

P0071

Towards a first draft of the octoploid Strawberry genome sequence

IRTA, Centre for Research in Agricultural Genomics

P0078

Branching out–Expanding the sequencing of the mammalian tree

Broad Institute

P0080

Variation detection in the Bos taurus genome using novel in-solution exome capture

Cofactor Genomics

P0082

Whole-genome sequencing identifies multiple protein function affecting variants within QTL regions for pulmonary hypertension syndrome in Chicken

Wageningen University, Animal Breeding and Genomics Centre

P0083

Analysing the Buffalo genome

Parco Tecnologico Padano

P0084

Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)

National Center for Genome Resources (NCGR)

P0085

Challenges and opportunities for improving the Atlantic Cod genome assembly and annotation

University of Oslo

P0086

De novo transcriptome assembly of the plant-parasitic nematode Aphelenchoides fragariae

School of Agricultural, Forest, and Environmental Sciences, Clemson University

P0089

De novo assembly of Campylobacter fetus subspecies and biovars genomes reveal unique features in pathogenecity islands

Centre for Comparative Genomics, Murdoch University

P0104

Validation of VERSA Mini NGLP for automated library preparation with the Illumina platform

Aurora Biomed

P0106

Automation of library preparation for high-resolution ChIP-seq profiling

University of California, Davis

P0112

Long-span, mate-pair pNGS-FOS libraries and applications

Lucigen Corporation

P0114

Sequences of 14,600 gene-bearing minimal tiling path BACs of Morex Barley

University of California, Riverside

P0117

Global allele-specific expression reveals the molecular basis of general combining ability

State Key Laboratory of Hybrid Rice, College of Life Science, Wuhan University

P0121

Using Sequenom to study gene expression and gene loss in natural and synthetic polyploid generations (Tragopogon, Asteraceae)

University of Florida, Gainesville

P0124

Identification of differentially expressed microRNAs associated with PRRSV infection

North Carolina State University, Raleigh

P0125

Genotyping-by-sequencing (GBS) in Sheep

AgResearch Ltd. Invermay Agricultural Centre

P0126

Transcriptome sequencing of Water Buffalo embryos

Parco Tecnologico Padano

P0127

Transcript profiling differentiates healthy control, sub-clinical and clinical Johne's Disease in Dairy Cattle

National Center for Genome Resources

P0129

SNP-calling in the Zebrafish Mutation Project

Wellcome Trust Sanger Institute

P0130

The Zebrafish Mutation Project: Systematic genome-wide identification of knockout alleles in the Zebrafish using whole exome enrichment and Illumina sequencing

Wellcome Trust Sanger Institute

P0133

New NEBNext reagents and adaptors for NGS library preparation

New England Biolabs

P0137

Phylogenomics of organelles using Illumina sequence data

University of Missouri, Columbia

P0150

Genotyping-by-sequencing for mapping phenotypic traits in T. cacao

Stanford University

P0170

Using multiplexed massively parallel sequencing to aid genetic conservation and restoration in Port-Orford-cedar

USDA Forest Service

P0182

Mass genotyping by sequencing technology

Eureka Genomics

P0184

Application of random sequence-based genotyping (rSBG) in crops

KeyGene

P0189

SNP mining in the genome of Barley

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

P0192

Characterising genetic variation in Lolium perenne breeding populations using a genotype by sequencing approach

Department of Molecular Biology and Genetics, Aarhus University

P0199

Genome-wide SNP development and validation for Allotetraploid Gossypium

Texas A&M University

P0201

A 1536-plex Oil Palm SNP set for genetic mapping and identification of markers associated with Oil Palm fruit colour

Malaysian Palm Oil Board

P0202

High-density SNP mapping on Peach (Prunus persica L. Batsch) populations

University of California, Davis

P0203

Genome-wide assessment of SNPs in Peanut using Illumina (Solexa) sequencing

Texas Tech University

P0205

High density genetic mapping of Sunflower

Department of Plant Biology, University of Georgia

P0206

The genetics of branching in Sunflower

University of Georgia, Athens

P0207

Association genetics in cultivated Sunflower

University of Georgia, Athens

P0208

High-density SNP analysis of cultivated Tomato (Solanum lycopersicum L.)

The Ohio State University/OARDC, Wooster

P0209

Effects of the Porcine 384-SNP assay system using selected SNPs for meat quality

College of Life Sciences and Biotechnology, Korea University

P0211

Genomic evaluation for litter size in Canadian Yorkshire pigs

Canadian Centre for Swine Improvement Inc.

P0213

An approach for genome-wide characterization of nsSNPs using the Illumina BovineHD SNPchip

Universidad Autónoma de Baja California

P0225

Genomic studies of the Coconut (Cocos nucifera L.)

The Australian National University

P0227

Developing market-class specific indel markers from next generation sequence data in Phaseolus vulgaris

Genomics and Bioinformatics Program, North Dakota State University, Fargo

P0239

A pipeline for transcriptome assembly and SNP identification in highly heterozygous crops

Institute for Agricultural and Fisheries Research (ILVO)

P0251

Developing a high-throughput SNP genotyping workflow to support breeding applications in Rice

International Rice Research Institute

P0262

Isolation of Rice genes involved in important agronomic traits using whole genome resequencing

Iwate Biotechnology Research Center

P0274

Identification of candidate genes in Rice for resistance to Sheath Blight Disease by whole genome sequencing

Louisiana State University Agricultural Center, Baton Rouge

P0295

Characterizing the effects of down-regulating the GPC genes on the Wheat transcriptome during monocarpic senescence in Wheat

University of California, Davis

P0309

Mining high water and nitrogen use efficient Wheat (T. aestivum L.) genotypes in the USDA-ARS National Small Grains Collection

University of Idaho

P0315

Discovery of Puccinia striiformis f.sp. tritici effectors by whole genome resequencing and comparative genomics

John Innes Centre

P0332

Genetic dissection of the domestication syndrome in tetraploid Wheat

University of California, Davis

P0338

Development of chromosome genomics in wild relatives of Wheat (Aegilops spp.)

Institute of Experimental Botany

P0346

Structural and temporal variation in the genetic diversity of a European collection of Barley cultivars and utility for association mapping of quantitative traits

CRA–Genomics Research Centre

P0353

Annotation of miRNAs from developing Sseeds in Avena sativa

University of North Carolina, Charlotte

P0359

A large Maize SNP genotyping array: Development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

TraitGenetics GmbH

P0378

RNA-Seq in Puccinia melanocephala susceptible and resistant Sugarcane

USDA-ARS

P0386

Identification of key genes involved in cell death and defense responses to pathogens in Arabidopsis using next generation sequencing strategy and the lesion mimic mutant vad1

CNRS-INRA

P0390

Genetic diversity in C genome diploid Brassicas

University of Warwick

P0392

SNP analysis in Brassica napus

University of Queensland

P0393

Mutation detection in Brassica napus using Illumina sequencing

National Research Council, Saskatoon

P0394

PCR-based screening platform for an Oilseed Rape BAC library

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

P0398

High density SNP consensus map a useful tool for Rapeseed genomic

Biogemma

P0410

Curating the Medicago truncatula genome

J. Craig Venter Institute

P0418

Development and evaluation of a high-density Illumina Infinium iSelect BeadChip SoySNP50K

USDA-ARS, Soybean Genomics and Improvement Lab

P0432

Genome-wide transcriptional analysis of five-foliate leaf mutant and wild type Soybean isolines

University of Illinois, Urbana

P0455

Improvement of information and material resources of Lotus japonicus

Kazusa DNA Research Institute

P0467

The transcriptome of Tomato (S. lycopersicum)

Italian Agency for New Technologies Energy & Sustainable Development

P0468

Comparative genomics of Solanum galapagense, a wild relative of Tomato

Boyce Thompson Institute for Plant Research

P0480

Genome-wide SNP discovery from de novo assemblies of Pepper (Capsicum annuum) transcriptomes

Seed Biotechnology Center, University of California, Davis

P0483

Development of a saturated linkage map for Apple using a high-throughput GoldenGate SNP platform

Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana-Champaign

P0488

Deep re-sequencing of Apricot genome toward genome-wide association analysis in Stone Fruit species

Clemson University

P0491

Simultaneous mapping and candidate gene identification in Peach via sequencing of pooled genomes (Pnomes)

USDA-ARS

P0492

Application of high throughput genotyping techniques in Peach germplasm and breeding lines within the FruitBreedomics Project

IRTA-Consortium CSIC-IRTA-UAB-UB. Centre of Research in Agricultural Genomics (CRAG)

P0494

Sequence analysis of 16 ethylene-related genes in “Stony Hard” Peach using NGS data

CRA–Fruit Tree Research Center

P0504

Introns and exons in Citrus genome

Centro de Citricultura Sylvio Moreira, IAC

P0511

Prunus mume draft genome

Beijing Forestry University

P0514

Genome-wide gene diversity of two Pinus species

University of Florida, Gainesville

P0515

Transcriptome dynamics in the dormancy-­spring growth transition of Douglas Fir Needles

US Forest Service

P0519

Genomic resources for Black Cherry

Pennsylvania State University, University Park

P0520

The Chinese Chestnut (Castanea Mollissima) Genome Project

Pennsylvania State University

P0522

Generation of a Eucalyptus globulus reference genome and gene catalogue

GYDLE

P0542

An integrated approach to Cattle epigenomics: Genome-wide methylome and histone modification profiling

Dept. for Innovation in Biological, Agrofood and Forest systems, University of Tuscia

P0543

High throughput SNP discovery in the Bovine lactome by RNA sequencing

Department of Animal Science, University of California, Davis

P0550

Validation of Bovine selective sweeps using high resolution SNP data

University of Missouri, Columbia

P0552

Comparison of different bayesian methods for QTL mapping in Hereford Beef Cattle using 1 Mb Windows

Iowa State University, Ames

P0553

Utilising information from heterogeneous SNP panels for genome analysis in Dairy Cattle

University of Sydney

P0556

Genome-wide association analysis of Paratuberculosis susceptibility in US Jersey Cattle

Department of Animal Sciences, University of Wisconsin, Madison

P0559

A mutation in Hephaestin-Like 1 (HEPHL1) is responsible for hypotrichosis in Belted Galloway Cattle

University of Illinois, Urbana

P0560

SNP array based identification of copy number variants in Italian Brown Swiss Cattle

Università degli Studi di Milano

P0561

Hunting for the weaver causative mutation in Brown Swiss Cattle

BFGL, ARS-USDA

P0562

Large-scale identification of the causative genetic variants influencing traits of economic interest in French Dairy breeds

Animal Genetics and Integrative Biology

P0564

Polymorphisms in positional candidate genes on BTA3 and BTA13 affect carcass quality in Hanwoo Cattle

Chungbuk National University

P0565

A whole genome association study to detect SNPs for growth and carcass qualtiy traits in Korean native cattle, Hanwoo

Yeungnam University

P0567

A genome wide association analysis for carcass traits in Beef Cattle

University of Illinois, Urbana

P0569

Deep mRNA sequencing for transcriptome profiling of skeletal muscle tissues

Dept. of Ecology and Biology, University of Tuscia

P0576

Development and characterisation of a low density (5K) Illumina Ovine SNP chip

AgResearch

P0577

Development of a SNP panel for parentage assignment in Sheep

CSIRO Livestock Industries

P0578

The use of a 50K SNP array for identifying genomic regions associated with a range of traits in Rambouillet Sheep

Utah State University, Logan

P0581

Validation of a low density SNP panel for breed certification testing in Brazilian Sheep (Ovis aries) breeds as a tool for flock genetic management

EMBRAPA Recursos Geneticos e Biotecnologia

P0586

A region on ovine chromosome 2 is associated with brachygnathia, cardiomegaly and renal hypoplasia syndrome (BCRHS) in Merino Sheep

University of Sydney

P0587

A heritable AGTPBP1 missense mutation is responsible for a lower motor neuron disease in Romney Sheep

Iowa State University, Ames

P0589

Ovine GM1-gangliosidosis is caused by a mutation in GLB1

University of Illinois, Urbana

P0591

Mapping the dark eye patching gene in Churra and Ojalada Spanish Sheep breeds

Universidad de Leon

P0598

Insight into human directed selection through comparison of gene expression patterns between modern and heritage Chicken lines

University of Delaware, Newark

P0612

Spleen transcriptome response to aflatoxin in the domestic Turkey

University of Minnesota, St. Paul

P0614

Sequencing radiation hybrids for genome assembly: Example of the Duck genome

Institut National de la Recherche Agronomique

P0617

Pig Genome 10.2 annotation and gene prediction using mRNA and microRNA sequencing evidence

Aarhus University, Department of Molecular Biology and Genetics

P0623

Efficiency of heterologous capture for targeted resequencing of the major histocompatibility complex in Suidae and Tayassuidae

INRA, UMR GABI

P0633

Associations between multiple single nucleotide polymorphisms (SNPs) in 33 candidate genes and meat quality traits in commercial Pigs

University of Alberta, Edmonton

P0634

GWAS and beyond: Unravelling complex genomic variation in Boar Taint

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh

P0648

A genome-wide association study identifies locus for eye color variation in Puerto Rican Paso Fino Horses

University of Tampa

P0650

Genome wide association of sarcoid tumors in Horses

Cornell University

P0651

Candidate gene evaluation of Equine neuroaxonal dystrophy based on genome-wide association analysis

University of California, Davis

P0652

Genetic determinants in Equine cervical stenotic myelopathy

University of Kentucky, Lexington

P0654

Towards the complete genome: Progress of Common Carp Genome Project

Center for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences

P0657

Comprehensive annotation of the transcriptome of Channel Catfish (Ictalurus punctatus) by paired-end RNA-Seq

Auburn University

P0659

RNA-Seq analysis of differentially expressed genes in Channel Catfish after Flavobacterium columnare challenge

Auburn University

P0661

Identification of genes associated with heat tolerance in Catfish exposed to chronic thermal stress using RNA-Seq

Auburn University

P0663

New in-depth Rainbow Trout transcriptome reference and digital atlas of gene expression

West Virginia University, Morgantown

P0665

Identification of differentially expressed miRNAs potentially associated with egg quality in Rainbow Trout (Oncorhynchus mykiss)

West Virginia University, Morgantown

P0667

RAD sequencing applications in three species of Columbia River fishes

Columbia River Intertribal Fish Commission

P0668

Identification of 2 novel interleukin 1 beta family genes in Japanese flounder  Paralichthys olivaceus

Tokyo University of Marine Science and Technology

P0671

Identification of quantitative trait loci associated with caviar yield and ovarian adiposity in White Sturgeon (Acipenser transmontanus)

University of California, Davis

P0679

Sequencing Brachypodium insertional mutants using TDNA-Seq

USDA

P0689

Markers development and linkage analysis in Cynara cardunculus L

DIVAPRA Plant Genetics and Breeding, University of Turin

P0690

High density SSR- and SNP-based genetic maps of Flax

University of Mantioba, Winnipeg

P0695

Quick determination of chloroplast whole genome of Magnolia kobus DC., a deciduous Magnolia, using Solexa/Illumina technology

Teragen Co.

P0700

A sequence-based physical map of the Sunflower (Helianthus annuus L.) genome

University Of British Columbia, Vancouver

P0710

Detection of single nucleotide variation in Polar, Black and Brown Bears using a next generation sequencing approach

Department of Animal Science, University of California, Davis

P0713

Comparative analysis of the Marmoset (Callithrix jacchus) genome, an initial report of a highly unusual new world primate

Human Genome Sequencing Center, Baylor College of Medicine

P0714

Bodyweight: Genetic aspects in an experimental Cat population

University of Sydney

P0726

The Camelina sativa Genome Project: An emerging stress-tolerant biofuel seed crop in the Brassicaeae

Pennsylvania State University, University Park

P0727

Cassava genome from ancestor to cultivar

Institute of Tropical Biosciences & Biotechnology, CATAS

P0743

Quantitative genetic analysis of wood chemistry and biomass traits in Sunflower

University of Georgia, Athens

P0793

An improved rRNA removal process for RNA-Seq library preparation

Epicentre (an Illumina comapny)

P0797

Expression differences in six Puccinia triticina races and their effect on Wheat

USDA-ARS

P0807

De novo hybrid transcriptome assembly and RNA-Seq analysis of Switchgrass crowns and rhizomes

USDA-ARS

P0808

Expression analysis of endophyte-infected and endophyte-free Tall Fescue

USDA-ARS

P0819

Monitoring expression profiling of a set of abiotic and biotic stress responsive candidate genes in Chickpea (Cicer arietinum L.) through qRT-PCR

International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)

P0822

Investigating the novel sesquiterpene biosynthesis pathway in Copaifera officinalis, ‘the Diesel Tree,' through next-generation de novo transcriptome sequencing and functional genomics

University of Tennessee, Knoxville

P0825

Investigation of suberin biosynthesis using Cotton fibers

National Center for Genome Resources

P0829

Quantitative differential gene expression in Peach during short-day induced growth cessation

School of Agricultural, Forest & Environmental Sciences, Clemson University

P0835

Using RNASeq to profile Soybean seed development from fertilization to maturity

University of Illinois, Urbana

P0838

Endogenous siRNAs that silence chalcone synthase result in pigment pattern formation on seed coats in Glycine max

University of Illinois, Urbana

P0839

Identification of differentially expressed genes in Fiskeby III under ozone stress conditions

University of North Carolina, Charlotte

P0844

Transcriptome response to acute thermal stress in juvenile Chinook Salmon

University of California, Davis

P0860

Functional genomics of nitrogen metabolism in Maize kernels grown in culture

University of Illinois, Urbana-Champaign

P0863

Mapping cell fate decisions that occur during Soybean defense responses

Mississippi State University

P0868

Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla x grandis evaluated by RNA-seq technology

UNICAMP

P0874

Discovery and characterization of conserved and novel miRNAs of leaf, root and fiber of Cotton

Auburn University

P0916

Systems approach to the understanding of metabolic diversity in Melon

Agricultural Research Organization

P0925

The extent of LD in the domestic Cat Felis catus

University of California, Davis

P0937

Gene expression and SNP detection in high throughput and high resolution by “Massive Analysis of cDNA Ends” (MACE)

GenXPro-GmbH

P0953

The Triticeae toolbox (T3): Containing keys to unlock the Triticeae genome and phenome

USDA-ARS-WRRC

P0957

BraMRs: A novel Brassica rapa miRNA database based on small RNA deep-sequencing

National Academy of Agricultural Science, RDA

P0966

Updates in GDR, the genome database for Rosaceae

Washington State University, Pullman

P0982

PAVE: Integrated transcript analysis

University of Arizona/Bio5 Institute, Tucson

P0985

A new statistical method for gene discovery from large-scale gene expression data with next-generation sequencing technology

Meiji University

P0989

Improving draft genome assemblies using next-gen data with gap-filling and scaffolding assembly tools

Human Genome Sequencing Center, Baylor College of Medicine

P0990

Extensive analysis of parameter tuning effects in a de novo assembly pipeline based on short reads

Keio University

P1015

Efficient de novo computation of ultra-high density genetic maps from RAD marker sequencing

Max Planck Institute for Developmental Biology

P1022

Accuracy of imputed 50k genotypes from 3k and 6k chips in Dairy Cattle breeds using FImpute

University of Guelph

P1024

De novo assembly and annotation of a Dinoflagellate transcriptome from 2nd generation sequencing technology

University of Maryland, College Park

Illumina CSPro Partners at PAG ®

The Illumina Certified Service Provider (CSPro) program is a collaborative service partnership dedicated to ensuring the delivery of the highest-quality data available for genetic analysis applications. Illumina CSPro certification provides a competitive advantage for service providers and ensures that customers who use Illumina CSPro services receive the industry-leading data quality and service they have come to expect from Illumina.

Learn more at www.illumina.com/CSPro

#226

#212

#407

#532

#426

#210

#206

#525

#406

#224

#408

CSPro Workshops BGI

GeneSeek Inc.

Next-Gen Sequencing for Enhanced Agricultural Breeding

Next Generation Genomic Solutions for Agribusiness

Monday, January 16 6:10 p.m. – 8:20 p.m.

Tuesday, January 17 1:30 p.m. – 3:40 p.m.

Pacific Salon I

Sunset

www.illumina.com © 2012 Illumina, Inc. All rights reserved. Illumina, illuminaDx, BaseSpace, BeadArray, BeadXpress, cBot, CSPro, DASL, DesignStudio, Eco, GAIIx, Genetic Energy, Genome Analyzer, GenomeStudio, GoldenGate, HiScan, HiSeq, Infinium, iSelect, MiSeq, Nextera, Sentrix, SeqMonitor, Solexa, TruSeq, VeraCode, the pumpkin orange color, and the Genetic Energy streaming bases design are trademarks or registered trademarks of Illumina, Inc. All other brands and names contained herein are the property of their respective owners. Pub No. 070-2011-035 Current as of 09 January 2012

#432